Region: Novus Lucidum
If they blow up far above your country and rain radioactive waste over you then no. In fact, taking them out might makes things worse, raining radioactive dust over a large area.
The anti missile systems are designed to take out missiles with warheads before they hit the ground, not to take out high flying rockets filled with waste.
However, the actual damage of such rockets would not be that bad, even if it would increase cancer and similar health problem for your citizens. And the dust could blow over to neighboring countries too.